ORCA
Warning: page not updated for current Triton
This page hasn’t been updated since Triton was completely upgraded in May 2024. The software might not be installed and the old information below might not work anymore (or might need adapting). If you need this software, open an issue and tell us so we can reinstall/update it.
ORCA is a scientific software that provides cutting-edge methods in the fields of density functional theory and correlated wave-function based methods.
Basic Usage
You can do a simple run with ORCA with the
following script
.
#!/bin/bash
#SBATCH --time=00:15:00
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=4
#SBATCH --mem=2G
#SBATCH --output=orca_example.out
# remove any existing modules
module purge
# load the open-mpi library
module load openmpi/4.1.2
# load orca module
module load orca/5.0.3
# remove old outputs
rm -f water*
# create an example input
cat > water.inp << EOF
!HF
!DEF2-SVP
!PAL4
* xyz 0 1
O 0.0000 0.0000 0.0626
H -0.7920 0.0000 -0.4973
H 0.7920 0.0000 -0.4973
*
EOF
# Parallel runs need the full path to orca executable
# Do not use srun as orca will call mpi independently: https://www.orcasoftware.de/tutorials_orca/first_steps/trouble_install.html#using-openmpi
$(command -v orca) water.inp
This script performs a parallel run of ORCA to simulate the behavior of water
molecule. The input file for this simulation is called water.inp
, which is
written to by the cat command.
To run this script, download it and submit into the queue using sbatch
:
$ wget https://raw.githubusercontent.com/AaltoSciComp/scicomp-docs/master/triton/examples/orca/orca_example.sh
$ sbatch orca_example.sh
How to launch ORCA when using MPI parallelism
When doing parallel runs you should always launch ORCA with
$(command -v orca) input_file.inp
in your Slurm scripts. This is because ORCA will need the executable to be launched with the full path of the executable and it will launch the MPI tasks independently. For more information, see this documentation page.
Setting the number of MPI tasks
The example given above asked for 4 MPI tasks by setting
#SBATCH --ntasks-per-node=4
in the Slurm batch script and then told
ORCA to use 4 tasks by setting !PAL4
in the input file.
When asking for more than 8 tasks you need use %PAL NPROCS 16 END
to
set the number of tasks in ORCA input (here, the line would specify 16 tasks).
For more information please refer to ORCA’s documentation page on parallel calculations.